Fast calculation of the Subtree Prune and Regraft (SPR),
Tree Bisection and Reconnection (TBR) and Replug distances between
unrooted trees, using the algorithms of Whidden and
Matsen (2017) <doi:10.48550/arXiv.1511.07529>.
| Version: |
1.0.2 |
| Depends: |
R (≥ 3.4.0) |
| Imports: |
ape, Rdpack, TreeDist, TreeTools (≥ 1.1.0) |
| LinkingTo: |
BH, Rcpp |
| Suggests: |
knitr, rmarkdown, testthat |
| Published: |
2020-09-17 |
| DOI: |
10.32614/CRAN.package.TBRDist |
| Author: |
Martin R. Smith 
[aut, cre, cph],
Chris Whidden [cph] |
| Maintainer: |
Martin R. Smith <martin.smith at durham.ac.uk> |
| BugReports: |
https://github.com/ms609/TBRDist/issues/ |
| License: |
GPL (≥ 3) |
| Copyright: |
Underlying C++ code copyright 2018 Chris Whidden. |
| URL: |
https://ms609.github.io/TBRDist/,
https://github.com/ms609/TBRDist/,
https://github.com/cwhidden/uspr/ |
| NeedsCompilation: |
yes |
| SystemRequirements: |
C++11 |
| Language: |
en-GB |
| Citation: |
TBRDist citation info |
| Materials: |
NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
TBRDist results [issues need fixing before 2025-12-18] |