| Type: | Package |
| Title: | Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis 'shiny' Application |
| Version: | 0.1.2 |
| Maintainer: | Robert G Young <rgyoung6@gmail.com> |
| Description: | Metabarcoding analysis using the 'DBTC' package is implemented here using 'shiny' in an interactive graphical user interface to conduct Metabarcode analyses and visualize and filter results. |
| License: | GPL-2 | GPL-3 |
| Encoding: | UTF-8 |
| URL: | <https://github.com/rgyoung6/DBTCShiny> |
| Imports: | DBTC, DT, ggplot2, leaflet, leaflet.extras, magrittr, shiny, shinyFiles, shinyjs, shinycssloaders, shinydashboard, shinyWidgets, |
| Language: | en-GB |
| RoxygenNote: | 7.3.1 |
| NeedsCompilation: | no |
| Packaged: | 2024-05-03 15:11:47 UTC; robgy |
| Author: | Robert G Young 
[aut, cre, cph] |
| Repository: | CRAN |
| Date/Publication: | 2024-05-03 23:30:02 UTC |
Launch DBTCShiny
Description
This function launches the DBTCShiny Application
Usage
launchDBTCShiny(verbose = TRUE)
Arguments
verbose |
If set to TRUE then there will be output to the R console, if FALSE then this reporting data is suppressed (Default TRUE). |
Details
This function launches a DBTCShiny Application which allows a user to run the 'DBTC' functions and process high throughput sequencing data.
Value
There are no values or files returned from this function
Note
This is a wrapper function which launches the DBTCShiny package as a 'Shiny' application in the systems default browser program
Author(s)
Robert G. Young
References
<https://github.com/rgyoung6/DBTC> Young, R. G., Hanner, R. H. (Submitted October 2023). Metabarcoding analysis using Dada-BLAST-Taxon Assign-Condense shiny Application (DBTCShiny). Biodiversity Data Journal.
See Also
dada_implement() combine_dada_output() make_BLAST_DB() seq_BLAST() taxon_assign() combine_assign_output() reduce_taxa() combine_reduced_output()
Examples
if(interactive()){
launchDBTCShiny()
}