Last updated on 2025-11-28 19:50:32 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 16.53 | 458.48 | 475.01 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 12.16 | 319.04 | 331.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 43.00 | 705.63 | 748.63 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 42.00 | 641.24 | 683.24 | OK | |
| r-devel-windows-x86_64 | 0.1.0 | 22.00 | 565.00 | 587.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 18.85 | 434.65 | 453.50 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 15.19 | 437.93 | 453.12 | OK | |
| r-release-macos-arm64 | 0.1.0 | OK | ||||
| r-release-macos-x86_64 | 0.1.0 | 29.00 | 642.00 | 671.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 20.00 | 626.00 | 646.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | NOTE | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 32.00 | 672.00 | 704.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.1.0 | 28.00 | 785.00 | 813.00 | NOTE |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘xpose.xtras-Ex.R’ failed
The error most likely occurred in:
> ### Name: backfill_nlmixr2_props
> ### Title: Populate some properties from nlmixr2 fit
> ### Aliases: backfill_nlmixr2_props
>
> ### ** Examples
>
>
> xpdb_nlmixr2 %>%
+ set_prop(condn = "not implemented") %>%
+ get_prop("condn")
[1] "not implemented"
>
> xpdb_nlmixr2 %>%
+ set_prop(condn = "not implemented") %>%
+ backfill_nlmixr2_props() %>%
+ get_prop("condn")
Error: package "qs" needed for this function to work
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [409s/418s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(xpose.xtras)
ℹ xpose is not currently attached.
Attaching package: 'xpose.xtras'
The following object is masked from 'package:stats':
filter
>
> test_check("xpose.xtras")
Saving _problems/test-nlmixr2-11.R
Saving _problems/test-nlmixr2-14.R
Saving _problems/test-nlmixr2-18.R
Error in loadNamespace(x) : there is no package called 'qs'
Saving _problems/test-nlmixr2-320.R
[ FAIL 4 | WARN 2 | SKIP 9 | PASS 792 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3',
'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3', 'test-xset_features.R:170:3',
'test-xset_features.R:170:3'
• requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in%
getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3',
'test-diag_constants.R:129:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-nlmixr2.R:9:3'): nlmixr2 is compatible ───────────────────────
Expected `nlmixr2_as_xtra(fit_example)` not to throw any errors.
Actually got a <rlang_error> with message:
No `nlmixr2` fit object found.
Caused by error in `loadNamespace()`:
! there is no package called 'qs'
── Failure ('test-nlmixr2.R:12:3'): nlmixr2 is compatible ──────────────────────
Expected `nlmixr2_as_xtra(fit_example, .skip_assoc = TRUE)` not to throw any errors.
Actually got a <rlang_error> with message:
No `nlmixr2` fit object found.
Caused by error in `loadNamespace()`:
! there is no package called 'qs'
── Error ('test-nlmixr2.R:15:3'): nlmixr2 is compatible ────────────────────────
Error in `backfill_nlmixr2_props(.)`: No `nlmixr2` fit object found.
Caused by error in `loadNamespace()`:
! there is no package called 'qs'
Backtrace:
▆
1. ├─testthat::expect_failure(...) at test-nlmixr2.R:15:3
2. │ └─testthat:::capture_success_failure(expr)
3. │ └─base::withCallingHandlers(...)
4. ├─testthat::expect_identical(...)
5. │ └─testthat::quasi_label(enquo(object), label)
6. │ └─rlang::eval_bare(expr, quo_get_env(quo))
7. ├─xpose.xtras::nlmixr2_as_xtra(fit_example)
8. │ ├─... %>% backfill_nlmixr2_props()
9. │ └─xpose.nlmixr2::xpose_data_nlmixr2(obj = obj, ...)
10. │ ├─obj$dataMergeInner
11. │ └─nlmixr2est:::`$.nlmixr2FitData`(obj, "dataMergeInner")
12. │ ├─nlmixr2est::nmObjGetData(.lst)
13. │ └─nlmixr2est:::nmObjGetData.dataMergeInner(.lst)
14. │ └─nlmixr2est:::.dataMergeStub(.obj, preferFit = FALSE)
15. │ ├─obj$origData
16. │ └─nlmixr2est:::`$.nlmixr2FitData`(obj, "origData")
17. │ └─nlmixr2est:::`$.nlmixr2FitCore`(.env, arg, exact)
18. │ ├─nlmixr2est::nmObjGet(.lst)
19. │ └─nlmixr2est:::nmObjGet.default(.lst)
20. ├─xpose.xtras::backfill_nlmixr2_props(.)
21. │ └─xpose.xtras:::assert_nlmixr2fit(xpdb)
22. │ ├─xpose.xtras:::xpa(...)
23. │ │ ├─rlang::try_fetch(...)
24. │ │ │ ├─base::tryCatch(...)
25. │ │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
26. │ │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
27. │ │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
28. │ │ │ └─base::withCallingHandlers(...)
29. │ │ └─rlang::exec(...)
30. │ └─xpose.xtras::test_nlmixr2_has_fit(xpdb)
31. │ └─xpose::check_xpdb(xpdb)
32. │ └─xpose::is.xpdb(xpdb)
33. ├─xpose.xtras:::mutate_files(...)
34. │ └─xpose::check_xpdb(xpdb)
35. │ └─xpose::is.xpdb(xpdb)
36. ├─xpose.xtras::set_prop(., file = mod_name)
37. │ └─xpose::get_summary(xpdb)
38. │ └─xpose::check_xpdb(xpdb, check = "summary")
39. │ └─xpose::is.xpdb(xpdb)
40. ├─xpose.xtras::as_xp_xtras(.)
41. │ └─xpose.xtras::as_xpdb_x(x)
42. │ └─base::structure(x, class = c("xp_xtras", "uneval"))
43. ├─xpose.xtras::attach_nlmixr2(., obj)
44. │ └─xpose::check_xpdb(xpdb)
45. │ └─xpose::is.xpdb(xpdb)
46. ├─base::loadNamespace(x)
47. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
48. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
49. │ │ └─base (local) doWithOneRestart(return(expr), restart)
50. │ └─base::stop(cond)
51. └─rlang (local) `<fn>`(`<pckgNtFE>`)
52. └─handlers[[1L]](cnd)
53. └─rlang::abort(...)
── Error ('test-nlmixr2.R:319:5'): pure LL fits can be used ────────────────────
Error: there is no package called 'qs'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-nlmixr2.R:318:3
2. │ └─base::withCallingHandlers(...)
3. ├─nlmixr2est::nlmixr(...) at test-nlmixr2.R:319:5
4. └─nlmixr2est:::nlmixr2.function(...)
5. └─nlmixr2est:::nlmixr2Est0(.env)
[ FAIL 4 | WARN 2 | SKIP 9 | PASS 792 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: installed package size
Result: NOTE
installed size is 8.9Mb
sub-directories of 1Mb or more:
data 3.5Mb
doc 2.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64