Last updated on 2025-11-28 07:48:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.63 | 759.46 | 798.09 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.04 | 497.99 | 521.03 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 95.00 | 1191.48 | 1286.48 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 88.00 | 1217.99 | 1305.99 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 44.00 | 529.00 | 573.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 55.62 | 706.16 | 761.78 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.90 | 719.55 | 756.45 | ERROR | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 37.00 | 531.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 515.00 | 554.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 9.00 | 115.00 | 124.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 68.00 | 801.00 | 869.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 51.00 | 662.00 | 713.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [438s/218s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2025-11-22 16:12:30.232359: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.233057: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.243508: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.263711: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:30.314084: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.314538: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.322394: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.346589: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:30.37029: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.370896: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.384507: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.431091: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:30.432277: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:30.457181: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.457661: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.472389: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.518709: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:30.519943: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:30.605971: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.606414: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.641751: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.744873: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:30.777544: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.778197: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.808877: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.011988: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:31.016407: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:31.153255: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.155127: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.162551: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.181881: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:31.21362: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.214286: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.240543: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.283584: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:31.286432: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:31.41966: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.422407: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.429835: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.449253: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:31.493159: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.493842: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.508025: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.554907: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:31.556088: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:31.629682: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.630115: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.637001: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.654894: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:31.743954: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.744621: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.774234: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.82285: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:31.824104: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:31.906486: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.90695: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.915493: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.935722: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:31.986528: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.987262: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.001921: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.046196: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:32.047416: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:32.12589: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.126355: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.13389: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.153006: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:32.199826: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.200462: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.226701: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.27192: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:32.273197: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:32.357986: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.358428: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.365198: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.383211: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:32.459232: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.459711: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.468831: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.488058: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:32.511642: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.512089: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.519428: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.538722: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.2977876')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-27 08:14:13.750145: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.750402: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.753699: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.761328: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:13.774971: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.77513: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.777608: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.784493: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:13.791924: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.792117: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.796911: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.811235: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:13.811674: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:13.818565: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.81871: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.82337: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.839362: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:13.83971: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:13.86087: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.861006: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.865595: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.901263: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:13.910159: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.910361: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.919521: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.002989: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.011249: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.045079: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.045238: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.047678: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.054311: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.06124: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.061403: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.066118: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.081192: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.081717: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.114359: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.114524: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.117197: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.123649: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.134696: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.134842: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.138781: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.15326: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.153659: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.171306: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.171457: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.173866: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.180475: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.189437: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.189575: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.201108: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.21765: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.218078: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.236266: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.236402: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.238932: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.24557: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.257215: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.257436: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.262116: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.277857: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.278277: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.295471: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.295607: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.298062: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.30439: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.315917: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.316169: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.321002: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.33646: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.336917: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.357564: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.357729: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.360092: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.366273: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.392459: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.392606: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.394983: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.401805: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.407594: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.407739: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.410094: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.416576: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [343s/436s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-27 22:23:02.401233: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:02.402551: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:02.414328: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:02.467215: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:02.594804: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:02.595106: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:02.675001: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:02.703401: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:02.740592: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 22:23:02.74104: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:02.772665: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:02.872136: embedding
> test_pipeop_isomap.R: 2025-11-27 22:23:02.878294: DONE
> test_pipeop_isomap.R: 2025-11-27 22:23:02.913758: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 22:23:02.914087: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:02.960559: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:03.061993: embedding
> test_pipeop_isomap.R: 2025-11-27 22:23:03.063925: DONE
> test_pipeop_isomap.R: 2025-11-27 22:23:03.282: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:03.282381: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:03.299497: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:03.508315: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:03.587508: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 22:23:03.587955: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:03.673769: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:04.217511: embedding
> test_pipeop_isomap.R: 2025-11-27 22:23:04.221856: DONE
> test_pipeop_isomap.R: 2025-11-27 22:23:04.547451: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:04.547797: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:04.59664: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:04.654584: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:04.705614: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 22:23:04.706041: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:04.748372: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:04.858936: embedding
> test_pipeop_isomap.R: 2025-11-27 22:23:04.860254: DONE
> test_pipeop_isomap.R: 2025-11-27 22:23:05.129386: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:05.130174: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:05.140592: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:05.161583: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:05.261403: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 22:23:05.262015: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:05.292676: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:05.380002: embedding
> test_pipeop_isomap.R: 2025-11-27 22:23:05.381628: DONE
> test_pipeop_isomap.R: 2025-11-27 22:23:05.506552: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:05.506874: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:05.523337: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:05.577144: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:05.658863: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 22:23:05.659935: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:05.678405: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:05.859792: embedding
> test_pipeop_isomap.R: 2025-11-27 22:23:05.88907: DONE
> test_pipeop_isomap.R: 2025-11-27 22:23:06.257408: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:06.257754: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:06.26587: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:06.359809: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:06.630723: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 22:23:06.632679: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:06.68137: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:06.862373: embedding
> test_pipeop_isomap.R: 2025-11-27 22:23:06.864092: DONE
> test_pipeop_isomap.R: 2025-11-27 22:23:06.999543: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:06.999998: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:07.0199: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:07.053494: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:07.208648: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 22:23:07.209342: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:07.251753: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:07.375363: embedding
> test_pipeop_isomap.R: 2025-11-27 22:23:07.38089: DONE
> test_pipeop_isomap.R: 2025-11-27 22:23:07.565788: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:07.566149: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:07.609035: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:07.67198: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:07.828086: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:07.828746: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:07.8492: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:07.886041: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 22:23:07.938177: Isomap START
> test_pipeop_isomap.R: 2025-11-27 22:23:07.93848: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 22:23:07.958897: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 22:23:07.989052: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [281s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-26 13:50:45.695907: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:45.696884: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:45.710179: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:45.732491: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:45.807552: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:45.808173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:45.818855: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:45.842664: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:45.884071: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:45.885044: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:45.907652: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:45.951247: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:45.952517: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:45.980858: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:45.981483: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.002677: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:46.049789: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:46.051698: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:46.181007: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:46.181645: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.205326: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:46.3231: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:46.371513: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:46.372496: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.418498: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:46.653856: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:46.659324: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:46.880361: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:46.880998: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.891429: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:46.913862: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:46.95913: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:46.960022: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.979441: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.030732: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:47.032393: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:47.231011: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.231767: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.243887: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.267746: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:47.332129: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.333056: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.353214: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.403336: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:47.404976: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:47.512576: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.513202: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.524712: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.547002: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:47.614327: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.615233: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.638453: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.690438: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:47.692148: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:47.827575: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.828344: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.839758: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.859716: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:47.931758: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.932666: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.952211: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.002564: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:48.004168: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:48.113459: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.114096: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.121974: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.142294: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:48.207086: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.208088: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.227983: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.279734: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:48.281369: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:48.411021: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.411725: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.422387: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.446389: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:48.54226: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.54294: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.553976: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.576866: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:48.607983: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.608448: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.636175: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.658338: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64