CRAN Package Check Results for Package clam

Last updated on 2025-07-27 08:48:24 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.6.2 6.91 64.00 70.91 OK
r-devel-linux-x86_64-debian-gcc 2.6.3 5.26 44.78 50.04 OK
r-devel-linux-x86_64-fedora-clang 2.6.2 102.39 ERROR
r-devel-linux-x86_64-fedora-gcc 2.6.3 133.44 OK
r-devel-windows-x86_64 2.6.3 8.00 76.00 84.00 OK
r-patched-linux-x86_64 2.6.2 7.26 59.79 67.05 OK
r-release-linux-x86_64 2.6.2 5.92 51.25 57.17 ERROR
r-release-macos-arm64 2.6.2 93.00 OK
r-release-macos-x86_64 2.6.3 74.00 OK
r-release-windows-x86_64 2.6.2 8.00 69.00 77.00 ERROR
r-oldrel-macos-arm64 2.6.2 100.00 OK
r-oldrel-macos-x86_64 2.6.3 75.00 OK
r-oldrel-windows-x86_64 2.6.2 10.00 96.00 106.00 OK

Check Details

Version: 2.6.2
Check: examples
Result: ERROR Running examples in ‘clam-Ex.R’ failed The error most likely occurred in: > ### Name: add.dates > ### Title: Add dates to age-depth plots > ### Aliases: add.dates > > ### ** Examples > > base_temp_dir <- tempdir() > clam_dir <- file.path(base_temp_dir, "clam_runs") > dir.create(clam_dir, recursive = TRUE, showWarnings = FALSE) > clam(, coredir=clam_dir, ask=FALSE) The run's files will be put in this folder: /tmp/RtmpDyMxK0/working_dir/Rtmpr8Ppu6/clam_runs/Example Warning, some dates lie partly outside the calibration curve! Error in `[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) : undefined columns selected Calls: clam -> .read.clam -> [ -> [.data.frame Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.6.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘clam.Rmd’ using rmarkdown Quitting from clam.Rmd:30-36 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. └─clam::clam(, ask = FALSE, coredir = clam_dir) 2. └─clam:::.read.clam(...) 3. ├─dat$hpd[[i]][2 * nrow(dat$hpd[[i]])] 4. └─base::`[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'clam.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘clam.Rmd’ SUMMARY: processing the following file failed: ‘clam.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-release-windows-x86_64

Version: 2.6.2
Check: examples
Result: ERROR Running examples in ‘clam-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: add.dates > ### Title: Add dates to age-depth plots > ### Aliases: add.dates > > ### ** Examples > > base_temp_dir <- tempdir() > clam_dir <- file.path(base_temp_dir, "clam_runs") > dir.create(clam_dir, recursive = TRUE, showWarnings = FALSE) > clam(, coredir=clam_dir, ask=FALSE) The run's files will be put in this folder: /home/hornik/tmp/scratch/RtmpZXTYav/clam_runs/Example Warning, some dates lie partly outside the calibration curve! Error in `[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) : undefined columns selected Calls: clam -> .read.clam -> [ -> [.data.frame Execution halted Flavor: r-release-linux-x86_64

Version: 2.6.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘clam.Rmd’ using rmarkdown Quitting from clam.Rmd:30-36 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. └─clam::clam(, ask = FALSE, coredir = clam_dir) 2. └─clam:::.read.clam(...) 3. ├─dat$hpd[[i]][2 * nrow(dat$hpd[[i]])] 4. └─base::`[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'clam.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘clam.Rmd’ SUMMARY: processing the following file failed: ‘clam.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Version: 2.6.2
Check: examples
Result: ERROR Running examples in 'clam-Ex.R' failed The error most likely occurred in: > ### Name: add.dates > ### Title: Add dates to age-depth plots > ### Aliases: add.dates > > ### ** Examples > > base_temp_dir <- tempdir() > clam_dir <- file.path(base_temp_dir, "clam_runs") > dir.create(clam_dir, recursive = TRUE, showWarnings = FALSE) > clam(, coredir=clam_dir, ask=FALSE) The run's files will be put in this folder: D:\temp\2025_07_26_01_50_00_9596\RtmpkDjjjz\clam_runs/Example Warning, some dates lie partly outside the calibration curve! Error in `[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) : undefined columns selected Calls: clam -> .read.clam -> [ -> [.data.frame Execution halted Flavor: r-release-windows-x86_64