Last updated on 2025-07-26 08:49:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.6.2 | 6.91 | 64.00 | 70.91 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.6.2 | 4.85 | 38.88 | 43.73 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.6.2 | 102.39 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.6.2 | 109.07 | ERROR | |||
| r-devel-windows-x86_64 | 2.6.2 | 10.00 | 74.00 | 84.00 | OK | |
| r-patched-linux-x86_64 | 2.6.2 | 7.26 | 59.79 | 67.05 | OK | |
| r-release-linux-x86_64 | 2.6.2 | 6.27 | 59.42 | 65.69 | OK | |
| r-release-macos-arm64 | 2.6.2 | 93.00 | OK | |||
| r-release-macos-x86_64 | 2.6.2 | 220.00 | OK | |||
| r-release-windows-x86_64 | 2.6.2 | 9.00 | 77.00 | 86.00 | OK | |
| r-oldrel-macos-arm64 | 2.6.2 | 100.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.6.2 | 191.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.6.2 | 10.00 | 96.00 | 106.00 | OK |
Version: 2.6.2
Check: examples
Result: ERROR
Running examples in ‘clam-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add.dates
> ### Title: Add dates to age-depth plots
> ### Aliases: add.dates
>
> ### ** Examples
>
> base_temp_dir <- tempdir()
> clam_dir <- file.path(base_temp_dir, "clam_runs")
> dir.create(clam_dir, recursive = TRUE, showWarnings = FALSE)
> clam(, coredir=clam_dir, ask=FALSE)
The run's files will be put in this folder: /tmp/Rtmpdg2QW6/clam_runs/Example
Warning, some dates lie partly outside the calibration curve!
Error in `[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) :
undefined columns selected
Calls: clam -> .read.clam -> [ -> [.data.frame
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.6.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘clam.Rmd’ using rmarkdown
Quitting from clam.Rmd:30-36 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─clam::clam(, ask = FALSE, coredir = clam_dir)
2. └─clam:::.read.clam(...)
3. ├─dat$hpd[[i]][2 * nrow(dat$hpd[[i]])]
4. └─base::`[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]]))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'clam.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘clam.Rmd’
SUMMARY: processing the following file failed:
‘clam.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.6.2
Check: examples
Result: ERROR
Running examples in ‘clam-Ex.R’ failed
The error most likely occurred in:
> ### Name: add.dates
> ### Title: Add dates to age-depth plots
> ### Aliases: add.dates
>
> ### ** Examples
>
> base_temp_dir <- tempdir()
> clam_dir <- file.path(base_temp_dir, "clam_runs")
> dir.create(clam_dir, recursive = TRUE, showWarnings = FALSE)
> clam(, coredir=clam_dir, ask=FALSE)
The run's files will be put in this folder: /tmp/RtmpDyMxK0/working_dir/Rtmpr8Ppu6/clam_runs/Example
Warning, some dates lie partly outside the calibration curve!
Error in `[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) :
undefined columns selected
Calls: clam -> .read.clam -> [ -> [.data.frame
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.6.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘clam.Rmd’ using rmarkdown
Quitting from clam.Rmd:30-36 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─clam::clam(, ask = FALSE, coredir = clam_dir)
2. └─clam:::.read.clam(...)
3. ├─dat$hpd[[i]][2 * nrow(dat$hpd[[i]])]
4. └─base::`[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]]))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'clam.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘clam.Rmd’
SUMMARY: processing the following file failed:
‘clam.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.6.2
Check: examples
Result: ERROR
Running examples in ‘clam-Ex.R’ failed
The error most likely occurred in:
> ### Name: add.dates
> ### Title: Add dates to age-depth plots
> ### Aliases: add.dates
>
> ### ** Examples
>
> base_temp_dir <- tempdir()
> clam_dir <- file.path(base_temp_dir, "clam_runs")
> dir.create(clam_dir, recursive = TRUE, showWarnings = FALSE)
> clam(, coredir=clam_dir, ask=FALSE)
The run's files will be put in this folder: /tmp/RtmpR0FJ7F/working_dir/RtmpFB8tgA/clam_runs/Example
Warning, some dates lie partly outside the calibration curve!
Error in `[.data.frame`(dat$hpd[[i]], 2 * nrow(dat$hpd[[i]])) :
undefined columns selected
Calls: clam -> .read.clam -> [ -> [.data.frame
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc