71469624506be8ffbe6a630e721bd353 *DESCRIPTION
3c4b50f70520beabedb11e6435679220 *NAMESPACE
646fed0ab35d3792b4a7485b5aededaa *R/OGC.R
c55bb84a3f43889df3600300bef9814e *R/add.array.R
e69c5109949af27d64f222408841a483 *R/add.combi.R
0bdb20a2b480a541558238a8d58b761b *R/add.diag.R
95b42682d70d7ca4a1751a26f6348ec1 *R/add.diversity.R
f3c25012b7b5f5059bfa9c27c1ed6726 *R/add.fixed.effects.R
38908ca8fe093bbe08091f19871024bd *R/add.founder.kinship.R
50ea1fba967d0eed739ade9340e373f1 *R/analyze.bv.R
946b0dde279f201ca3d417101958de7d *R/analyze.population.R
d8481a60d0b6aa550c0a80cf61237f40 *R/bitwise.storing.R
366abbc218768f05d8923aabca21fec8 *R/breeding.diploid.R
892c8f7e1da4303a7b72d733c393b335 *R/breeding.intern.R
94ff0317aee887772ec8a04089f04134 *R/breeding.intern1.R
b9f667199d4431813223f0ea115ceb28 *R/breeding.intern2.R
553356504591302aaf0663cad1c408d7 *R/breeding.intern3.R
0e878d346254a00ce31c6ada33420fdf *R/breeding.intern4.R
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df9aa37ae0f787b2deb76f0dcc500aa1 *R/breeding.intern6.R
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0160ca5c142baa6b59040f44ccca6731 *R/breeding.intern8.R
e18abc5282f0577ed936debb73f3aa6b *R/bv.development.R
39b1f39dedc67d6e9a87fc591e924744 *R/bv.development.box.R
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9c3101f4614b62317bc0bbcd81e350ea *R/calculate.bv.R
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33af2342fbef5a45b64ed6dc680bc0a3 *R/clean.up.R
5f15398d4914c5d75fef778cbc047693 *R/codeOriginsR.R
1f4db710b981dbc78e3fb3cbec401dab *R/combine.traits.R
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64e8130dfeda124fefb4f77416fc278d *R/compute.costs.cohorts.R
2c428057dc7306e4426339d85dfc3b26 *R/compute.snps.R
9b5a653d67b791379604f965b79e9309 *R/creating.diploid.R
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828351594fe6d49444b9fb2d1c48b9bb *R/creating.trait.R
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1e2552190416faf3be0adbdf7b3a147d *R/edges.fromto.R
1fb67f9efb088ad4d05342fda8d6fdf6 *R/edit.animal.R
39796c3ec6c53fd0b369ed412ffcbb7a *R/effect.estimate.add.R
c55c387181eae8e51a189aa316f92423 *R/effective.size.R
e269f8301751fe278556639abbc0eb3c *R/epi.R
f467823c1d3190038b4a82f819fc14d0 *R/example.dataset.R
7135b58529282035fac5163dd7719de0 *R/exist.cohort.R
a92bcef10dbe01f838406aa8ef0782b6 *R/find.chromo.R
7972c0332ac126bb5d905e739c8b8976 *R/find.snpbefore.R
fd9c85c879f3b47539fa7262f1a727a8 *R/founder.simulation.R
2cf7b236080b3b278759447f4b6f600e *R/generation.individual.R
a5c605eaa657cd430181bda757f91069 *R/get.admixture.R
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71e1402571212bdfedf504193164b899 *R/get.allele.freq.R
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7db735f2ec10380b29e21680b68c3a68 *R/get.bve.R
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36a5de57532aecfdb30057d9f108217f *R/get.cohorts.R
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e1a95b6dba889ed0bd4b87ba6978826d *R/get.computing.time.R
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8fa9741d9f813b103a8a0aa8e2eda7b1 *R/get.culling.time.R
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4e01269fbc946e93185acb3cd108e1c4 *R/get.cullingtime.R
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f7c58528782af6910d72b605128e6fe7 *R/get.dendrogram.heatmap.R
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4dfe2213a58581ef9c7ba9e138a98ace *R/get.distance.R
331674e98849997006e1e842db0477ce *R/get.effect.freq.R
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822becfe2473325cea6ecfc348bde9e6 *R/get.fixed.effects.p.R
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91822f3aaa084745327af28af2405fda *R/get.geno.R
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848e433efb59337b9309aadeff4e24ed *R/get.genotyped.R
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77087a7dd1d1bd39b67af13ad88a4509 *R/get.is.first.R
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9ab69b019740ddeb21e590780e6cc97b *R/get.maf.R
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1d6cd7332f36bc5d6a05fc07e2a3782e *R/get.nindi.R
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7f3ad964a5e00973ad9c6c7ea8bb2959 *R/get.pca.R
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49ba4dfb5f7f62ecd8c3727c5d5f5b2d *R/get.pedigree.visual.R
af810d47acc9d8e5726508d28127447f *R/get.pedmap.R
31ecd3e296e5d0f3bc802e5d99528c77 *R/get.pen.R
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4f9ca646ab76bcb9efc2998c69dc43dd *R/get.pheno.off.R
12f832ead2d3801ffae3816031782313 *R/get.pheno.off.count.R
fa1219d92964e0d4823ab8e863f55e36 *R/get.pheno.single.R
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4fb41745acc7fbda43e172e0b12295a0 *R/get.phylogenetic.tree.R
4ad34d487a2fa81d1fb20da8815558bb *R/get.plink.R
90232e73b12e43f5afa7daec63dfafef *R/get.pool.R
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6bed3d706dc75d1929ce9149d3e42093 *R/get.qtl.R
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e85496e62fe8058356638f4e4cd3df02 *R/get.reliabilities.R
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2368c9a445d1856faf324b7aeaac3006 *R/get.sex.R
8ab4f32a77c85d38c12f4a88d80dfd7b *R/get.size.R
3f87bd2d6642d36fd240b38b8e038d9d *R/get.snapshot.R
42198c187742ca7b7954d8b9ea08275f *R/get.snapshot.single.R
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67d2dd6efb37d1455bcd8a221b11eca8 *R/get.trafo.p.R
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252e4f700a615bafbb04095cf400b637 *R/get.variance.components.R
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ebde2f7a0508333ada3285af0d537ce5 *R/inbreeding.emp.R
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514717eaa2d2b5e6d5c3eefd585ce9f3 *R/kinship.exp.store.R
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df5a782d6f947daf4121a959e610e80b *R/matrix.posdef.R
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1e8e50fe9580433e2b2d1cc48d75777b *R/pedmap.to.phasedbeaglevcf.R
90ad2fb9ee485d56ac6341d5caf52cdb *R/plot.population.R
a95251985a36dd0d0a3c30b82de6f9d2 *R/recalculate.bv.R
341b5bc30568b500a958a2f6772986d5 *R/recalculate.manual.R
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2f66a67dd33badea80303dcdb7bacd3a *data/cattle_chip.RData
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62cf377b453a341864eb6b8b4bae3727 *data/ex_json.RData
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508f3085009cb4f5af01e8e5440a3dc5 *data/maize_chip.RData
a1a16edb7a0ff1113805e45d1ed3a464 *data/pig_chip.RData
51148e064dde0caf38269a0a40375e9d *data/sheep_chip.RData
a22b73cd8eecf2a4ca5dae979333ffb8 *man/OGC.Rd
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76b2717fba4e50e463853cda143f7406 *man/add.combi.Rd
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781dc7da666d2698455db26fdbaf10c5 *man/add.diversity.Rd
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6da37179154c7695035f361b6174e118 *man/add.founder.kinship.Rd
cc7b06a4026b3411b08cde64023bee6e *man/alpha_to_beta.Rd
0f5f285bec413fdd7d0f2c7ba7482678 *man/analyze.bv.Rd
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5e1048960568f6ee2df4dc49081def8c *man/bit.snps.Rd
1b1f0b9e0b420e7a18077b1723ea993d *man/bit.storing.Rd
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7d3ffc999035fd0af6b717d3ed9f8f81 *man/breeding.intern.Rd
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934b4ab287b48447113ef40e02e6f350 *man/breeding.intern8.Rd
1124c89458ec3a990419fcc3e03009eb *man/bv.development.Rd
230fc38fdaa5b8a735983e4c71ee812b *man/bv.development.box.Rd
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557a365586cc9cb8e2e03652588a05a6 *man/calculate.bv.Rd
b0562df6ded764441d138d6402830281 *man/cattle_chip.Rd
bd5e802b7988123d193461bd7879f670 *man/check.parents.Rd
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424bb091adae9e425a10585656ed4364 *man/clean.up.Rd
3e00d9d9407b3efea5827edc191a28ad *man/codeOriginsR.Rd
fa19586c1cf30005ec33e13054aba05c *man/combine.traits.Rd
39b82e6f50ecd6522d3a83e5b5dd06c5 *man/computing.costs.Rd
a354981298968364e4cea013299c06cc *man/computing.costs.cohorts.Rd
0a5498eedbc7b0f9a5c72ceec2c13d3d *man/computing.snps.Rd
b70425cffc4173301d5cd811c956b7cc *man/computing.snps_single.Rd
345bbac4741c7f3b7f7342e8cd413853 *man/creating.diploid.Rd
1981865224d535846aac4a97955d1374 *man/creating.phenotypic.transform.Rd
dbdbe98d7fed2c3fe22787f1842402e7 *man/creating.trait.Rd
f019e3a0fa850f4b83be5acc039e3388 *man/decodeOriginsR.Rd
13f780ba3ca440db3b5cc7c91e18dd85 *man/demiraculix.Rd
3a37665d81a6f3ffbd800d9f6eed14a2 *man/derive.loop.elements.Rd
edcf42c56cfb784e8d97463031e68ed5 *man/diag.mobps.Rd
08a2163fcd5a73988471d5f5e7438005 *man/edges.fromto.Rd
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92af7034e7be2e581247814ceb47afdb *man/effect.estimate.add.Rd
6bee7095887069de729c7078ac49cc42 *man/effective.size.Rd
bb60e0ec91949a4746ee0786da360b69 *man/epi.Rd
300c863bbd5d4e839599b8acdf1ee199 *man/ex_json.Rd
54c43834634f157356514e0216108967 *man/ex_pop.Rd
242481019bb4cb7549793827c7f7908c *man/exist.cohort.Rd
a9e935184fc841705ca6a0d396656b78 *man/find.chromo.Rd
863587acb493259220834eb51e77da90 *man/find.snpbefore.Rd
4087992caf40823d2b957e6418185152 *man/founder.simulation.Rd
7e3d4084946e464cb26d7951524854c6 *man/generation.individual.Rd
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f533b0763f96e827816ed136c2801b93 *man/get.allele.freq.Rd
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43bb856fdc9e4e24bf5799dfa3dc1181 *man/get.bve.Rd
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4b16c6aeee716a3b162adcf1924e4eb8 *man/get.cohorts.individual.Rd
5ff344dc760f4cfef5120b2e8ffba82b *man/get.computing.time.Rd
da3432e2d8c9c045d34ede23259fa842 *man/get.creating.type.Rd
2cea47ea1a683cf41d3b585d188e4f6d *man/get.culling.time.Rd
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5921e8cf5e76712fa1d039d63dfb179a *man/get.cullingtime.Rd
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948721dd2e0c10f0d4d34db816d93553 *man/get.dendrogram.heatmap.Rd
655f79a0fcc32572a324da7e10520861 *man/get.dendrogram.trait.Rd
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1b1802161b8b3b3e77e876713435c79a *man/get.effect.freq.Rd
36625e01d30e3311039e2e7b9307fae2 *man/get.effective.size.Rd
90d159769c895569cb6c629f1b675754 *man/get.fixed.effects.p.Rd
cea5b324629ab7061b3a6e2dab250b65 *man/get.geno.Rd
59c91dcf4b944721dc9de34d033785b7 *man/get.geno.time.Rd
2e11d2c0e4deb842867fe21f0d6fe88a *man/get.genotyped.Rd
1a9f05c9ba002e549580bc49495b8002 *man/get.genotyped.snp.Rd
a1b95f861aa0aa1c48219bfb3ef72232 *man/get.haplo.Rd
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81bfb989159da523725f86846abcd7de *man/get.index.Rd
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43e123a54a4107248a0aba5f3c4de1eb *man/get.is.first.Rd
411eab3c90895318d4c53b02e9a5b573 *man/get.is.last.Rd
71848fdd6d75d478e3b22114a12b4dc2 *man/get.litter.Rd
434f4b982ca0f26a29f6b427bb170471 *man/get.litter.effect.Rd
b4bd80b26fe5540a8c744fa07238baed *man/get.maf.Rd
2ad6254825610f16ea1d069fcc8366d9 *man/get.map.Rd
932be462026190cc982de3ae1bca0874 *man/get.ngen.Rd
ad7882d6270aadf73e929246fdd815b8 *man/get.nindi.Rd
b35b7e0fad5a8c4ae852c40cebc37cf4 *man/get.npheno.Rd
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