b3ceeba8d00ce86bed1695b6a80ce55a *DESCRIPTION
f9b3c5a6d0a0a585ad85dd11f624e9c5 *LICENSE
d8f817687902b6f5c588957ce8228b43 *NAMESPACE
23914f2cb2e1c95ce0e29f71f244d16c *R/addPloidyData.R
51be2be043c4b58ac1745c7ec62965b8 *R/checkCompOverlap.R
c060e39931adae9af0311fd4248ea4d6 *R/compareExposures.R
3ba6f16e86ed2a8927162bd52955b44e *R/createSigs.R
4bb0dd07efa6acfee374f0891c939af4 *R/data.R
6cf9c36446afc531c7f3edcf10f6187e *R/detSigNumPipeline.R
30622d2b0f88cca74a5976aeca117085 *R/determineNumSigs.R
a079f748c808b45466c4f2fef05552ed *R/diffCompSigSim.R
7ecb33fb26e1b660c9fe130237085b5e *R/extractCNFeats.R
9df44f2f9046c5414d0940be4150fb8b *R/featureFuncs.R
a13f1a2fe4e4dbd7a9626fdb2d8a7556 *R/findExposures.R
4b4675530d91d8029ed55884a66ce56d *R/fitComponent.R
143abad3adeb5c7cecee33276b2cfc25 *R/fitModels.R
edf5915a6b783581dd796be4610a9246 *R/generateSCM.R
55cf017595deaa6dfe4deeb3e23d0bcd *R/matchSigs.R
d0e811a8419e48585def8dae02183d3c *R/plotComp.R
2b8fe182e4f8ec3943a058a1c31f323e *R/plotComps.R
b3ee5d60bb3fd701c99aa59a6322b583 *R/plotScm.R
609e85850ec80ab55c327d888d1ddc6a *R/plotSegs.R
58f2ea3ff43780b5fcb2db69b8705cd4 *R/plotSig.R
fce1af8ad85d95151b4182bee7ff4840 *R/plotSigExposure.R
a2184f735c45913b9b4ac915c66b24d2 *R/plotSigExposureMat.R
acc286103466d5bdab5e697af976f6c6 *R/plotSigMat.R
d49f3ba967a65943a7889c10f9061d60 *R/plotSigs.R
b2cc4bb1cb79d0150e53e021ce7a3a6c *R/postProb.R
ca8eb4fcb09a80c96374806b3159f50e *R/readSegs.R
8f9143940e11603a7442c65affb5a0a4 *R/reducePeaks.R
1d0889f6344423e0c1639facd44790a8 *R/remapResults.R
7731690db2ff849b465c2e9b65678da6 *R/runPipeline.R
6a26ea04b2366bef4909564a11d9056e *R/segStats.R
7ba3061d3b5494a1845e04cd04bdc9f9 *R/sigSim.R
1faeb7849c6ed53f01e3d3f2eb9683f9 *R/smoothSegs.R
8d39b66b22d21725faddf5c06c97a881 *R/sumOfPosteriors.R
1a401b637628c7084ce21e5a9680ee80 *R/sysdata.rda
82195fc747b320f683bc0b9090821ad9 *R/validateSegData.R
fbb04a389e681d8771476cd710ed14cb *build/vignette.rds
e727390cc14abfd6cba261166b1d77c9 *data/cancerComps.rda
0706eac3f67ae154aaeef9953e364e04 *data/cancerSigs.rda
5b637ab33f594c32797e420f3ec46999 *data/collapsedSigs.rda
1b1474ce554479fc6c7237f13489f4b0 *data/compsExp.rda
4cbb7cf35038e9b4e4d03b9b55d430fc *data/defaultFeats.rda
d4394397c3972c47be847ed3106f1457 *data/featsExp.rda
9150c63ad4ffc10870989aba82e82d38 *data/referenceExp.rda
e2ddf77f8a6b5ea5b486eb42c9214976 *data/scmExp.rda
914beee300259ee67d730bb9e5026a27 *data/segDataExp.rda
a9651038a68ec61501876e8b2a449665 *data/sigExposExp.rda
bfd94ba47896354a259c3a3146ad66d3 *data/sigsExp.rda
7a58d608a181e0a3cad723294d514b7f *inst/doc/CNSigs.R
8a8a1cf9fd75e27bcdc7703407d627c0 *inst/doc/CNSigs.Rnw
6f179bfec9479d289d49e0a06656a7f3 *inst/doc/CNSigs.pdf
aa4ba7b3db62cbce5f22fbcf6208041b *man/addPloidyData.Rd
2b7b0f3897d9256248fcd4b5b1b4634a *man/cancerComps.Rd
14d82b8c6d0d1f6303152aabc1e56a51 *man/cancerSigs.Rd
45a349698bf93bc9535bf0037dcd00e5 *man/checkCompOverlap.Rd
b063d2b8f9a7b97af367db9710784eba *man/collapsedSigs.Rd
92e4e634a82bec9b5531cea1d91a8835 *man/compareExposures.Rd
fdf8615b7c2f076a445d36c242b3c8be *man/compsExp.Rd
f5baf6d962ef86c808659260d93a0502 *man/createSigs.Rd
f2c1e9fb39aab304dedcf3843f6b5fa6 *man/defaultFeats.Rd
03e302d9ae0f5b8ac3d49f5d63e7cd50 *man/detSigNumPipeline.Rd
5a342eadd7ec7fff4fa089a52156804e *man/determineNumSigs.Rd
1547695416a5342c40a7ee3051005d6a *man/diffCompSigSim.Rd
965fa9c4460737220fae63b40585ab4a *man/extractCNFeats.Rd
82112324a94db302d80dae3de4de4132 *man/featsExp.Rd
2adf9a665f50d778c58bb8899efb7dd3 *man/featureFuncs.Rd
bf5beca93867d479a46d6f1fc4264b8c *man/findExposures.Rd
6ef5f55ff69d422afafd87f20a2fe2f5 *man/fitComponent.Rd
f3cb0ef6d08f3e88b38095de0e17fc3a *man/fitModels.Rd
9bb361dd3a5b1a4dfc18c8304de37e80 *man/generateSCM.Rd
a316f7fdcd670873909645138097b0d1 *man/matchSigs.Rd
ff1775ffabc168ed6c8332022c5508eb *man/plotComp.Rd
b7d719efd4aaa60606d4ed4cbd5a93a8 *man/plotComps.Rd
9077b02f05be43be81250fd392105da8 *man/plotScm.Rd
ea1c99095e9c297c5c4e198e478a3ed6 *man/plotSegs.Rd
7403b3050937a730fcb84605462cff5c *man/plotSig.Rd
9237dbba3c513fcc776a4465f43799d4 *man/plotSigExposure.Rd
cc892123bd1ccad2f0b58e31796d8c18 *man/plotSigExposureMat.Rd
6491fed3f18fba3792c9b2f7a9376cd1 *man/plotSigMat.Rd
d3a58c7cf6855582ca1518c8ddf7c982 *man/plotSigs.Rd
a4c521476f57a1b8d6a5be0c0aa532da *man/postProb.Rd
6a8c768c933eb70983d99cbbc34fd912 *man/readSegs.Rd
f810378a1d2ce73b30c1a1aceeb2470e *man/reducePeaks.Rd
53f128b9231c114aa018e6b129d0f521 *man/referenceExp.Rd
097b2e2cb25d9a5b4f43e6fa978d687d *man/remapResults.Rd
0b3d2e6346c84f90cee774ac6475b464 *man/runPipeline.Rd
e6ac0edcd2650991d8728f0d908da193 *man/scmExp.Rd
2c8003e25e11d16dee4fd85f35788cd4 *man/segDataExp.Rd
918cec528ce9ef5b5ebf91ae3e40d210 *man/segStats.Rd
1c50511b76cc21456ca7c7e0cde81fba *man/sigExposExp.Rd
b7ab10cb357817f77eb98c7c93314548 *man/sigSim.Rd
f3f786d7eec4f6da6c7963a52c65d5bb *man/sigsExp.Rd
136f71277f852c4c727be3f023839256 *man/smoothSegs.Rd
ce6a61f399bc356228ace71b8ebc4b75 *man/sumOfPosteriors.Rd
39d6f649e52db9990b801864d7e00f18 *man/validateSegData.Rd
48a497637ad5c8a625bfc231f532a0c8 *vignettes/CNSigs-concordance.tex
8a8a1cf9fd75e27bcdc7703407d627c0 *vignettes/CNSigs.Rnw
491357fd76c85eecb44079b482dcbe5f *vignettes/SampleSegData.png
1ae3a1a949c908518c64826e98d789b1 *vignettes/detSigNumInRP.jpg
596298a65798c5e099000db40b2238ee *vignettes/detSigNumPlot.jpg
70983ca9a4aebd0e3258a5b5564fb1cd *vignettes/runPipeline_flowchart.png
