* using log directory 'd:/Rcompile/CRANpkg/local/4.5/sfo.Rcheck' * using R version 4.5.2 (2025-10-31 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'sfo/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'sfo' version '0.1.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'sfo' can be installed ... OK * checking installed package size ... INFO installed size is 5.8Mb sub-directories of 1Mb or more: doc 5.1Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s] OK * checking Rd files ... [0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [2s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [2s] ERROR Running examples in 'sfo-Ex.R' failed The error most likely occurred in: > ### Name: sankey_ly > ### Title: Sankey Plot with Plotly > ### Aliases: sankey_ly > > ### ** Examples > > data("sfo_passengers") > > library(dplyr) Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union > > d <- sfo_passengers %>% + filter(activity_period >= 202201 & activity_period < 202301) > > head(d) activity_period operating_airline operating_airline_iata_code 1 202212 EVA Airways BR 2 202212 EVA Airways BR 3 202212 Emirates EK 4 202212 Emirates EK 5 202212 Flair Airlines, Ltd. F8 6 202212 Flair Airlines, Ltd. F8 published_airline published_airline_iata_code geo_summary geo_region 1 EVA Airways BR International Asia 2 EVA Airways BR International Asia 3 Emirates EK International Middle East 4 Emirates EK International Middle East 5 Flair Airlines, Ltd. F8 International Canada 6 Flair Airlines, Ltd. F8 International Canada activity_type_code price_category_code terminal boarding_area 1 Deplaned Other International G 2 Enplaned Other International G 3 Deplaned Other International A 4 Enplaned Other International A 5 Deplaned Low Fare International A 6 Enplaned Low Fare International A passenger_count 1 12405 2 15151 3 13131 4 14985 5 2543 6 2883 > > d %>% + filter(operating_airline == "United Airlines") %>% + mutate(terminal = ifelse(terminal == "International", "international", terminal)) %>% + group_by(operating_airline,activity_type_code, geo_summary, geo_region, terminal) %>% + summarise(total = sum(passenger_count), .groups = "drop") %>% + sankey_ly(cat_cols = c("operating_airline", "terminal","geo_summary", + "geo_region", "activity_type_code"), + num_col = "total", + title = "Distribution of United Airlines Passengers at SFO During 2022") Error: ! `summarise_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `summarise()` instead. Backtrace: ▆ 1. ├─... %>% ... 2. ├─sfo::sankey_ly(...) 3. │ ├─... %>% dplyr::bind_rows() 4. │ └─base::lapply(...) 5. │ └─sfo (local) FUN(X[[i]], ...) 6. │ └─... %>% ... 7. ├─dplyr::bind_rows(.) 8. │ └─rlang::list2(...) 9. ├─dplyr::left_join(...) 10. ├─dplyr::left_join(...) 11. └─dplyr::summarise_(...) 12. └─dplyr:::lazy_defunct("summarise", hint = FALSE) 13. └─lifecycle::deprecate_stop(...) 14. └─lifecycle:::deprecate_stop0(msg) 15. └─rlang::cnd_signal(...) Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [8s] ERROR Error(s) in re-building vignettes: --- re-building 'v1_intro.Rmd' using rmarkdown --- finished re-building 'v1_intro.Rmd' --- re-building 'v3_analyzing_landing.Rmd' using rmarkdown Quitting from v3_analyzing_landing.Rmd:127-143 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! `summarise_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `summarise()` instead. --- Backtrace: ▆ 1. ├─... %>% ... 2. ├─sfo::sankey_ly(...) 3. │ ├─... %>% dplyr::bind_rows() 4. │ └─base::lapply(...) 5. │ └─sfo (local) FUN(X[[i]], ...) 6. │ └─... %>% ... 7. ├─dplyr::bind_rows(.) 8. │ └─rlang::list2(...) 9. ├─dplyr::left_join(...) 10. ├─dplyr::left_join(...) 11. └─dplyr::summarise_(...) 12. └─dplyr:::lazy_defunct("summarise", hint = FALSE) 13. └─lifecycle::deprecate_stop(...) 14. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'v3_analyzing_landing.Rmd' failed with diagnostics: `summarise_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `summarise()` instead. --- failed re-building 'v3_analyzing_landing.Rmd' SUMMARY: processing the following file failed: 'v3_analyzing_landing.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [1s] OK * DONE Status: 2 ERRORs