* using log directory 'd:/Rcompile/CRANpkg/local/4.5/scSpatialSIM.Rcheck' * using R version 4.5.2 (2025-10-31 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'scSpatialSIM/DESCRIPTION' ... OK * this is package 'scSpatialSIM' version '0.1.3.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'scSpatialSIM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking whether startup messages can be suppressed ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [24s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [1s] OK Running 'testthat.R' [0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [309s] ERROR Error(s) in re-building vignettes: --- re-building 'a01_Introduction.Rmd' using rmarkdown Quitting from a01_Introduction.Rmd:148-155 [unnamed-chunk-13] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `combine_vars()`: ! Faceting variables must have at least one value. --- Backtrace: ▆ 1. ├─base::withVisible(knit_print(x, ...)) 2. ├─knitr::knit_print(x, ...) 3. └─knitr:::knit_print.default(x, ...) 4. └─knitr::normal_print(x) 5. ├─base::print(x) 6. └─ggplot2 (local) `print.ggplot2::ggplot`(x) 7. ├─ggplot2::ggplot_build(x) 8. └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x) 9. └─layout$setup(data, plot@data, plot@plot_env) 10. └─ggplot2 (local) setup(..., self = self) 11. └─self$facet$compute_layout(data, self$facet_params) 12. └─ggplot2 (local) compute_layout(..., self = self) 13. └─ggplot2::combine_vars(data, params$plot_env, vars, drop = params$drop) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a01_Introduction.Rmd' failed with diagnostics: Faceting variables must have at least one value. --- failed re-building 'a01_Introduction.Rmd' --- re-building 'a02_Using_with_spatialTIME.Rmd' using rmarkdown --- finished re-building 'a02_Using_with_spatialTIME.Rmd' SUMMARY: processing the following file failed: 'a01_Introduction.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... [3s] OK * DONE Status: 1 ERROR