AaJ                     The Aalen-Johansen estimator of state
                        probabilities from a multistate 'Lexis' object.
B.dk                    Births in Denmark by year and month of birth
                        and sex
BrCa                    Clinical status, relapse, metastasis and death
                        in 2982 women with breast cancer.
DMconv                  Conversion to diabetes
DMepi                   Epidemiological rates for diabetes in Denmark
                        1996-2015
DMlate                  The Danish National Diabetes Register.
Epi                     Epi: Functions for manipulation and statistical
                        analysis of epidemiological data
Icens                   Fits a regression model to interval censored
                        data.
LCa.fit                 Fit Lee-Carter-type models for rates to
                        arbitrarily shaped observations of rates in a
                        Lexis diagram.
Lexis                   Create a Lexis object of follow-up
Lexis.diagram           Plot a Lexis diagram
Lexis.lines             Draw life lines in a Lexis diagram.
Lexis2msm               Convert a Lexis obejct to a data set suitable
                        for input to the 'msm:msm' function.
Life.lines              Compute dates/ages for life lines in a Lexis
                        diagram
M.dk                    Mortality in Denmark 1974 ff.
N.dk                    Population size in Denmark
N2Y                     Create risk time ("Person-Years") in Lexis
                        triangles from population count data.
NArray                  Set up an array of NAs, solely from the list of
                        dimnames
Ns                      Natural splines - (cubic splines linear beyond
                        outermost knots) with convenient specification
                        of knots and possibility of centering,
                        detrending and clamping.
ROC                     Function to compute and draw ROC-curves.
Relevel                 Reorder and combine levels of a factor
S.typh                  Salmonella Typhimurium outbreak 1996 in
                        Denmark.
Termplot                A wrapper for 'termplot' that optionally (but
                        by default) exponentiates terms, and plot them
                        on a common log-scale. Also scales x-axes to
                        the same physical scale.
Y.dk                    Population risk time in Denmark
addCov                  Add covariates (typically clinical
                        measurements) taken at known times to a Lexis
                        object.
addDrug                 Expand a Lexis object with information of drug
                        exposure based on purchase dates and -amounts
apc.LCa                 Fit Age-Period-Cohort models and Lee-Carter
                        models with effects modeled by natural splines.
apc.fit                 Fit an Age-Period-Cohort model to tabular data.
apc.frame               Produce an empty frame for display of
                        parameter-estimates from
                        Age-Period-Cohort-models.
apc.lines               Plot APC-estimates in an APC-frame.
bdendo                  A case-control study of endometrial cancer
births                  Births in a London Hospital
blcaIT                  Bladder cancer mortality in Italian males
bootLexis               Create a bootstrap sample of persons (as
                        identified by 'lex.id') from a Lexis object
boxes.MS                Draw boxes and arrows for illustration of
                        multistate models.
brv                     Bereavement in an elderly cohort
cal.yr                  Functions to convert character, factor and
                        various date objects into a number, and vice
                        versa.
cbind.Lexis             Combining a Lexis objects with data frames or
                        other Lexis objects
ccwc                    Generate a nested case-control study
ci.Crisk                Compute cumulative risks and expected sojourn
                        times from models for cause-specific rates.
ci.cum                  Compute cumulative sum of estimates.
ci.eta                  Linear predictor ('eta') from a formula,
                        coefficients, vcov and a prediction frame.
ci.lin                  Compute linear functions of parameters with
                        standard errors and confidence limits,
                        optionally transforming to a different scale.
ci.pd                   Compute confidence limits for a difference of
                        two independent proportions.
clogistic               Conditional logistic regression
contr.cum               Contrast matrices
count                   Special functions for use in stat.table
crr.Lexis               Fit a competing risks regression model
                        (Fine-Gray model) using a Lexis object)
cutLexis                Cut follow-up at a specified date for each
                        person.
detrend                 Projection of a model matrix on the orthogonal
                        complement of a trend or curvature.
diet                    Diet and heart data
effx                    Function to calculate effects
effx.match              Function to calculate effects for individually
                        matched case-control studies
entry                   Time series and other methods for Lexis objects
erl                     Compute survival functions from rates and
                        expected residual lifetime in an illness-death
                        model as well as years of life lost to disease.
ewrates                 Rates of lung and nasal cancer mortality, and
                        total mortality.
expand.data             Function to expand data for regression analysis
                        of interval censored data.
fit.add                 Fit an additive excess risk model to interval
                        censored data.
fit.baseline            Fit a piecewise contsnt intesity model for
                        interval censored data.
fit.mult                Fits a multiplicative relative risk model to
                        interval censored data.
float                   Calculate floated variances
ftrend                  Fit a floating trend to a factor in generalized
                        linear model
gen.exp                 Generate covariates for drug-exposure follow-up
                        from drug purchase records.
glmLexis                Fit intensity models to follow-up data in Lexis
                        objects
gmortDK                 Population mortality rates for Denmark in
                        5-years age groups.
harm                    Create a basis of harmonic functions.
hivDK                   hivDK: seroconversion in a cohort of Danish men
in.span                 Is 'x' in the column span of matrix 'A' and
                        what columns are linearly dependent?
legendbox               Draw a box with text explaining the numbers in
                        and between boxes from 'boxes.MS' and
                        'boxes.Lexis'
lep                     An unmatched case-control study of leprosy
                        incidence
lgrep                   Convenience versions of grep
lls                     Functions to manage and explore the workspace
lungDK                  Male lung cancer incidence in Denmark
mat2pol                 Plot columns of a matrix as stacked areas.
matshade                Plot confidence intervals as shaded areas
                        around lines.
mcutLexis               Cut follow-up at multiple event dates and keep
                        track of order of events
merge.Lexis             Merge a Lexis object with a data frame
mh                      Mantel-Haenszel analyses of cohort and
                        case-control studies
mortDK                  Population mortality rates for Denmark in
                        1-year age-classes.
msdata                  Create a data structures suitable for use with
                        packages 'mstate' or 'etm'.
ncut                    Function to group a variable in intervals.
nice                    Nice breakpoints for axes on plots
nickel                  A Cohort of Nickel Smelters in South Wales
occup                   A small occupational cohort
paths.Lexis             Generate paths traveled through a Lexis
                        multistate model data frame.
pc.lines                Plot period and cohort effects in an APC-frame.
pctab                   Create percentages in a table
plot.Lexis              Lexis diagrams
plot.apc                Plot the estimates from a fitted
                        Age-Period-Cohort model
plotCIF                 Plotting Aalen-Johansen curves for competing
                        events
plotEst                 Plot estimates with confidence limits (forest
                        plot)
plotevent               Plot Equivalence Classes
poisreg                 Family Object for Poisson Regression
pr                      Diabetes prevance as of 2010-01-01 in Denmark
projection.ip           Projection of columns of a matrix.
rateplot                Functions to plot rates from a table classified
                        by age and calendar time (period)
rcutLexis               A function to cut follow-up at intermediate
                        event times.
rm.tr                   Remove transitions from a Lexis object.
simLexis                Simulate a Lexis object representing follow-up
                        in a multistate model.
splitLexis              Split follow-up time in a Lexis object
stack.Lexis             Functions to facilitate analysis of multistate
                        models.
stat.table              Tables of summary statistics
steno2                  Clinical trial: Steno2 baseline and follow-up.
subset.Lexis            Subsetting Lexis (and stacked.Lexis) objects
summary.Lexis           Summarize transitions and risk time from a
                        Lexis object
testisDK                Testis cancer incidence in Denmark, 1943-1996
thoro                   Thorotrast Study
timeBand                Extract time band data from a split Lexis
                        object
timeScales              The time scales of a Lexis object
transform.Lexis         Transform a Lexis (or stacked.Lexis) object
twoby2                  Analysis of a two by two table
unLexis                 Remove Lexis attributes from a 'Lexis' object.
xcutLexis               Cut follow-up in a 'Lexis' object by event
                        date(s) while preserving the original states.
                        This is essentially a cross-classification of
                        the original states and the new ones, hence the
                        "'x'".
