# A Bunch of Structure and Sequence Analysis

## Documentation for package ‘BoSSA’ version 3.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BoSSA-package | A Bunch of Structure and Sequence Analysis
BoSSA | A Bunch of Structure and Sequence Analysis
circular_tree | Plot an inside-out circular tree
plot.jplace | Plot a pplace or jplace object
plot.pplace | Plot a pplace or jplace object
pplace | A placement object as obtained with the read_sqlite function
pplace_to_matrix | Pplace to contingency matrix
pplace_to_table | Merge the multiclass and the placement table of pplace object
pplace_to_taxonomy | Convert a pplace object to a taxonomy table
print.jplace | Compact display of pplace and jplace objects
print.pplace | Compact display of pplace and jplace objects
print.protdb | Compact display of protdb object
read_jplace | Read a jplace file
read_protdb | Read Protein Data Bank (PDB) file
read_sqlite | Read a pplacer/guppy sqlite file
refpkg | Summary data and plots for reference packages
sub_pplace | Subsets a pplace object
write_jplace | Write a jplace or pplace object to the disk