* using log directory 'd:/Rcompile/CRANpkg/local/4.4/faersquarterlydata.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'faersquarterlydata/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'faersquarterlydata' version '1.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'faersquarterlydata' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [13s] ERROR Running examples in 'faersquarterlydata-Ex.R' failed The error most likely occurred in: > ### Name: unify_tabular_ascii > ### Title: Unify the list to a tabular format > ### Aliases: unify_tabular_ascii > > ### ** Examples > > unify_tabular_ascii(ascii_list = als_faers_data) Error in `summarise()`: ℹ In argument: `indi_pt_ps = sort(unique(indi_pt))`. ℹ In group 79: `primaryid = 129433992`, `caseid = 12943399`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. ℹ To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = als_faers_data) 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) ``(``) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [61s] ERROR Running 'testthat.R' [61s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files/faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) ``(``) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) ``(``) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) ``(``) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... [18s] OK * checking HTML version of manual ... [3s] OK * DONE Status: 2 ERRORs