Package: ccRemover
Type: Package
Title: Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
        Data
Version: 1.0.4
Authors@R: c(
    person("Jun", "Li", email = "jun.li@nd.edu",role = c("aut","cre")),
    person("Martin", "Barron", email = "mbarron2@nd.edu",role = c("aut")))
Description: Implements a method for identifying and removing
				the cell-cycle effect from scRNA-Seq data. The description of the 
				method is in Barron M. and Li J. (2016) <doi:10.1038/srep33892>. Identifying and removing 
				the cell-cycle effect from single-cell RNA-Sequencing data. Submitted. 
				Different from previous methods, ccRemover implements a mechanism that
				formally tests whether a component is cell-cycle related or not, and thus
				while it often thoroughly removes the cell-cycle effect, it preserves
				other features/signals of interest in the data.
Depends: R (>= 2.10.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Imports: stats, utils
NeedsCompilation: no
Packaged: 2017-08-17 15:33:13 UTC; Administrator
Author: Jun Li [aut, cre],
  Martin Barron [aut]
Maintainer: Jun Li <jun.li@nd.edu>
Repository: CRAN
Date/Publication: 2017-08-19 12:23:32 UTC
Built: R 4.4.3; ; 2026-02-16 02:22:35 UTC; windows
