* using log directory 'd:/Rcompile/CRANpkg/local/4.6/sarp.snowprofile.alignment.Rcheck'
* using R Under development (unstable) (2025-12-06 r89118 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'sarp.snowprofile.alignment/DESCRIPTION' ... OK
* this is package 'sarp.snowprofile.alignment' version '2.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sarp.snowprofile.alignment' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [2s] ERROR
Running examples in 'sarp.snowprofile.alignment-Ex.R' failed
The error most likely occurred in:

> ### Name: dtwSP
> ### Title: Calculate DTW alignment of two snow profiles
> ### Aliases: dtwSP
> 
> ### ** Examples
> 
> 
> ## Align a modeled and a manual snow profile, primarily based on default settings:
> dtwAlignment <- dtwSP(SPpairs$A_modeled, SPpairs$A_manual, open.end = FALSE)
Error in r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0] : 
  non-numeric argument to binary operator
Calls: dtwSP ... format_snowprofileLayers -> snowprofileLayers -> diff -> diff.default
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [2s] ERROR
  Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(sarp.snowprofile.alignment)
  Loading required package: sarp.snowprofile
  > 
  > test_check("sarp.snowprofile.alignment")
  Saving _problems/test-distanceSP-8.R
  Saving _problems/test-dtwSP-8.R
  Saving _problems/test-dtwSP-19.R
  Saving _problems/test-dtwSP-31.R
  Saving _problems/test-dtwSP-42.R
  Saving _problems/test-dtwSP-54.R
  Saving _problems/test-dtwSP-77.R
  Saving _problems/test-dtwSP-112.R
  Saving _problems/test-dtwSP-124.R
  [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-distanceSP.R:5:3'): simSP calculated as anticipated ────────────
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-distanceSP.R:5:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  ── Error ('test-dtwSP.R:5:3'): resampled, uneven (nL_q > nL_r), bottom.up (i.e., layer-tracking) ──
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:5:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  ── Error ('test-dtwSP.R:16:3'): resampled, uneven (nL_q > nL_r), top.down ──────
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:16:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  ── Error ('test-dtwSP.R:28:3'): resampled, uneven (nL_q < nL_r), bottom.up (i.e., layer-tracking) ──
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:28:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  ── Error ('test-dtwSP.R:39:3'): resampled, uneven (nL_q < nL_r), top.down ──────
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:39:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  ── Error ('test-dtwSP.R:51:3'): rescaled and resampled, top.down ───────────────
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:51:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  ── Error ('test-dtwSP.R:74:3'): resampled, uneven, best match ──────────────────
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:74:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  ── Error ('test-dtwSP.R:109:3'): resampled, uneven, bottom.up ──────────────────
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:109:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  ── Error ('test-dtwSP.R:122:3'): resampled, uneven, top.down, unobservedBasalLayer, warp:jminTopDown ──
  Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
  Backtrace:
      ▆
   1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:122:3
   2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
   3.     └─sarp.snowprofile::snowprofileLayers(...)
   4.       └─sarp.snowprofile::format_snowprofileLayers(...)
   5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
   6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
   7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
  
  [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s] ERROR
Error(s) in re-building vignettes:
--- re-building 'averaging.Rmd' using rmarkdown

Quitting from averaging.Rmd:45-52 [avgSPcalc]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `averageSP()`:
! Can't find an average profile!
---
Backtrace:
    ▆
 1. └─sarp.snowprofile.alignment::averageSP(SPgroup2, n = 1, progressbar = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'averaging.Rmd' failed with diagnostics:
Can't find an average profile!
--- failed re-building 'averaging.Rmd'

--- re-building 'clustering.Rmd' using rmarkdown

Quitting from clustering.Rmd:91-94 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `hclust()`:
! NA/NaN/Inf in foreign function call (arg 10)
---
Backtrace:
    ▆
 1. └─sarp.snowprofile.alignment::clusterSP(...)
 2.   ├─base::do.call("hclust", c(list(d = distmat), config$args_cluster))
 3.   └─stats::hclust(d = `<dist[,5]>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'clustering.Rmd' failed with diagnostics:
NA/NaN/Inf in foreign function call (arg 10)
--- failed re-building 'clustering.Rmd'

--- re-building 'technical-details.Rmd' using rmarkdown
--- finished re-building 'technical-details.Rmd'

--- re-building 'workflow.Rmd' using rmarkdown

Quitting from workflow.Rmd:38-41 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`:
! non-numeric argument to binary operator
---
Backtrace:
    ▆
 1. └─sarp.snowprofile.alignment::dtwSP(...)
 2.   └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
 3.     └─sarp.snowprofile::snowprofileLayers(...)
 4.       └─sarp.snowprofile::format_snowprofileLayers(...)
 5.         └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
 6.           ├─base::diff(sapply(entries[!is.na(entries)], length))
 7.           └─base::diff.default(sapply(entries[!is.na(entries)], length))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'workflow.Rmd' failed with diagnostics:
non-numeric argument to binary operator
--- failed re-building 'workflow.Rmd'

SUMMARY: processing the following files failed:
  'averaging.Rmd' 'clustering.Rmd' 'workflow.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... [12s] OK
* DONE
Status: 3 ERRORs