* using log directory 'd:/Rcompile/CRANpkg/local/4.4/ezec.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'ezec/DESCRIPTION' ... OK * this is package 'ezec' version '1.0.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ezec' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [4s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [4s] OK * checking loading without being on the library search path ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [4s] ERROR Running examples in 'ezec-Ex.R' failed The error most likely occurred in: > ### Name: EC_table > ### Title: Function to generate a table of EC values from a data frame of > ### multiple isolates. > ### Aliases: EC_table > > ### ** Examples > > data(dummydata) > # Using 3 parameter Log-Logistic Model (default) > EC_table(dummydata, form = response ~ dose) Error: ! `do_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `do()` instead. ℹ See vignette('programming') for more help Backtrace: ▆ 1. ├─ezec::EC_table(dummydata, form = response ~ dose) 2. │ └─dat %>% dplyr::group_by_(idcol) %>% ... 3. └─dplyr::do_(...) 4. └─dplyr:::lazy_defunct("do") 5. └─lifecycle::deprecate_stop(...) 6. └─lifecycle:::deprecate_stop0(msg) 7. └─rlang::cnd_signal(...) Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [5s] ERROR Running 'testthat.R' [5s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(ezec) > > test_check("ezec") Saving _problems/test-tables-45.R [ FAIL 2 | WARN 0 | SKIP 1 | PASS 2 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-tables.R:19:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-tables.R:45:3'): EC_table can read files ─────────────────────── Error: `do_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `do()` instead. ℹ See vignette('programming') for more help Backtrace: ▆ 1. ├─ezec::EC_table(tmp, form = response ~ dose, sep = ",") at test-tables.R:45:3 2. │ └─dat %>% dplyr::group_by_(idcol) %>% ... 3. └─dplyr::do_(...) 4. └─dplyr:::lazy_defunct("do") 5. └─lifecycle::deprecate_stop(...) 6. └─lifecycle:::deprecate_stop0(msg) 7. └─rlang::cnd_signal(...) ── Error ('test-tables.R:54:3'): Insufficient data is handled well ───────────── Error: `do_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `do()` instead. ℹ See vignette('programming') for more help Backtrace: ▆ 1. ├─testthat::expect_output(...) at test-tables.R:54:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─testthat::capture_output_lines(code, print, width = width) 5. │ │ └─testthat:::eval_with_output(code, print = print, width = width) 6. │ │ ├─withr::with_output_sink(path, withVisible(code)) 7. │ │ │ └─base::force(code) 8. │ │ └─base::withVisible(code) 9. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 10. ├─ezec::EC_table(...) 11. │ └─dat %>% dplyr::group_by_(idcol) %>% ... 12. └─dplyr::do_(...) 13. └─dplyr:::lazy_defunct("do") 14. └─lifecycle::deprecate_stop(...) 15. └─lifecycle:::deprecate_stop0(msg) 16. └─rlang::cnd_signal(...) [ FAIL 2 | WARN 0 | SKIP 1 | PASS 2 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [5s] ERROR Error(s) in re-building vignettes: --- re-building 'getting_started.Rmd' using rmarkdown Quitting from getting_started.Rmd:76-81 [ec_table] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! `do_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `do()` instead. ℹ See vignette('programming') for more help --- Backtrace: ▆ 1. ├─ezec::EC_table(dummydata, form = response ~ dose) 2. │ └─dat %>% dplyr::group_by_(idcol) %>% ... 3. └─dplyr::do_(...) 4. └─dplyr:::lazy_defunct("do") 5. └─lifecycle::deprecate_stop(...) 6. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'getting_started.Rmd' failed with diagnostics: `do_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `do()` instead. ℹ See vignette('programming') for more help --- failed re-building 'getting_started.Rmd' SUMMARY: processing the following file failed: 'getting_started.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... [1s] OK * DONE Status: 3 ERRORs