* using log directory 'd:/Rcompile/CRANpkg/local/4.4/GPCERF.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'GPCERF/DESCRIPTION' ... OK * this is package 'GPCERF' version '0.2.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GPCERF' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 13.3.0' * checking C++ specification ... OK Not all R platforms support C++17 * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [4s] OK * checking whether the package can be loaded with stated dependencies ... [4s] OK * checking whether the package can be unloaded cleanly ... [4s] OK * checking whether the namespace can be loaded with stated dependencies ... [4s] OK * checking whether the namespace can be unloaded cleanly ... [4s] OK * checking loading without being on the library search path ... [4s] OK * checking whether startup messages can be suppressed ... [4s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [6s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [215s] ERROR Running 'testthat.R' [215s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2025-12-22 08:23:06.566256 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2025-12-22 08:23:15.492899 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2025-12-22 08:23:24.554266 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2025-12-22 08:23:37.301504 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:23:45.428706 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:23:54.316382 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=22608 on localhost:11192 at 08:23:54.684 2025-12-22 08:23:58.11715 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.8 s. 2025-12-22 08:23:58.176058 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:24:06.31885 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:24:14.580268 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2025-12-22 08:24:23.171613 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:24:31.542141 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:36.710869 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:24:43.632171 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:43.653814 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:24:52.340591 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:52.356692 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:52.373263 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:52.389605 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:52.406278 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:52.42446 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:52.443867 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:24:52.463597 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:25:01.123821 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 starting worker pid=28184 on localhost:11192 at 08:25:01.391 starting worker pid=61484 on localhost:11192 at 08:25:01.450 2025-12-22 08:25:10.528568 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:25:18.755773 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:25:18.759444 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-22 08:25:18.829491 CRANWIN2 69140 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=72436 on localhost:11192 at 08:25:19.163 2025-12-22 08:25:23.016778 CRANWIN2 69140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.18000000000001 s.} ... 2025-12-22 08:25:23.019182 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=43040 on localhost:11192 at 08:25:23.364 2025-12-22 08:25:26.693001 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.67999999999998 s. 2025-12-22 08:25:26.696422 CRANWIN2 69140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=95980 on localhost:11192 at 08:25:27.063 2025-12-22 08:25:32.009623 CRANWIN2 69140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.31 s. 2025-12-22 08:25:32.013346 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 13.26 s. 2025-12-22 08:25:32.020252 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:25:32.024354 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-22 08:25:32.045002 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:25:32.049625 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-22 08:25:32.101883 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:25:32.10544 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-22 08:25:32.123366 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:25:39.41773 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:25:39.421272 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-22 08:25:39.437877 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2025-12-22 08:25:39.441279 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2025-12-22 08:25:39.490986 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2025-12-22 08:25:47.649425 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:25:56.010984 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=26248 on localhost:11192 at 08:25:56.372 2025-12-22 08:26:00.408037 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.40000000000001 s. 2025-12-22 08:26:00.411704 CRANWIN2 69140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=45600 on localhost:11192 at 08:26:00.795 2025-12-22 08:26:04.888087 CRANWIN2 69140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.47999999999999 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2025-12-22 08:26:04.991636 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:26:11.890476 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:26:19.529144 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=106376 on localhost:11192 at 08:26:19.857 2025-12-22 08:26:23.395842 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.86000000000001 s. 2025-12-22 08:26:23.436473 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ... 2025-12-22 08:26:31.387043 CRANWIN2 69140 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=18964 on localhost:11192 at 08:26:31.748 2025-12-22 08:26:36.331655 CRANWIN2 69140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.94 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [180s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [6s] OK * DONE Status: 1 ERROR