NatSelSim               Simulating natural selection through time in a
                        bi-allelic gene
OneGenHWSim             Simulating one generation of genotypes under
                        Hardy-Weinberg equilibrium
ProteinSeq              Details, generics, and methods for the
                        'ProteinSeq' class
WFDriftSim              Simulating generations of genetic drift in a
                        Wright–Fisher (WF) population
birds_spp               Birds species list
calcFossilDivTT         Calculate paleo diversity curves through
                        different methods
checkAndFixUltrametric
                        Find and fix small rounding errors in
                        ultrametric trees
countSeqDiffs           Counting protein sequence differences
cytOxidase              Cytochrome Oxidase sequences
data_whales             Whale body size and speciation rates
dinos_fossil            Occurrence of dinosaur fossils
estimateSpeciation      Estimate speciation assuming a pure-birth
                        process
fitCRBD                 Fit a constant-rate birth-death process to a
                        phylogeny
lttPlot                 Make a lineage through time (LTT) plot
plotNatSel              Plot NatSelSim output
plotPaintedWhales       Plotting the whale phylogeny and coloring its
                        clades
plotProteinSeq          Plot protein sequence(s)
plotRawFossilOccs       Plot a literal interpretation of a fossil
                        record
plotWFDrift             Plot WFDriftSim output
simulateBirthDeathRich
                        Simulating richness through birth-death
                        processes
simulateTree            Simulating a phylogenetic trees through the
                        birth-death process
timeseries_fossil       Fossil Time series
whale_phylo             Whale Phylogeny
