barplot_with_interval   Barplot with Intervals
barplot_with_interval_23
                        Barplot with Intervals for two or three bars
                        beside
class.neighbours        Class neighbourhood distribution
class.neighbours.folder
                        class.neighbours.folder
classify                Classify DAPI
classify.folder         Classify DAPI
classify.single         Classify DAPI
classify.table          Count classes in classified image
colors.in.classes       Compute colors in classes distribution
colors.in.classes.folder
                        Compute colors in classes distribution for
                        folders
compute.distance2border
                        Compute distance to border of classes
dapimask                Mask DAPI in kernel
dapimask.file           Automatic DAPI mask segmentation for files
dapimask.folder         Automatic DAPI mask segmentation for folder
find.spots.file         Detects spots for one file
find.spots.folder       Detects spots
heatmap.color           Heatmap colors for n classes
heatmap7                Heatmap colors for 7 classes
nearestClassDistances.folder
                        Find all distances to next neighbour of all
                        classes for folders
plot_classify.folder    Plot barplot for classified images in a folder
plot_colors.in.classes.folder
                        Plot for colors in classes distribution for
                        folders
plot_nearestClassDistances.folder
                        Plots all distances to next neighbour of all
                        classes for folders
splitchannel            Split RGB channels
splitchannels           Split RGB images into channels and pixel size
                        information
splitchannels.file      Split channels into files and extracts size in
                        microns
splitchannels.folder    Split RGB images into channels and pixel size
                        information
spots.combined          Find spots using information from two channels
spots.combined.file     Find spots using information from two channels
spots.combined.folder   Find spots using information from two channels
                        for folder
t_colors.in.classes.folder
                        Test for colors in classes distribution for
                        folders
