BNLearnScorer           BNLearnScorer
CalculateAcceptanceRates
                        Calculate acceptance rates
CalculateEdgeProbabilities
                        Calculate pairwise edge probabilities
CalculateFeatureMean    Calculate arithmetic mean for a DAG feature
CollectUniqueObjects    Collect unique objects
CreateScorer            Scorer constructor
DAGtoCPDAG              Convert DAG to CPDAG
DAGtoPartition          Convert DAG to partition
DefaultProposal         Default proposal constructor
FlattenChains           Flatten chains
GetEmptyDAG             Get an empty DAG given a set of nodes.
GetIncrementalScoringEdges
                        Get incremental edges
GetLowestPairwiseScoringEdges
                        Preprocessing for blacklisting Get the lowest
                        pairwise scoring edges.
GetMAP                  Get the maximum a posteriori state
MutilateGraph           Mutilate graph
PartitionMCMC           Transition objects. Partition MCMC
PartitiontoDAG          Sample DAG from partition
PlotConcordance         Concordance plot
PlotCumulativeMeanTrace
                        Plot cumulative mean trace plot.
PlotScoreTrace          Plot the score trace
PostProcessChains       Index chains for further analysis
SampleChains            Sample chains
SampleEdgeProbabilities
                        Sample edge probabilities
SamplePosteriorPredictiveChains
                        Draw from a posterior predictive distribution
ScoreDAG                Score DAG.
ScoreLabelledPartition
                        Score labelled partition
UniformlySampleDAG      Uniformly sample DAG
[.cia_chain             Index a cia_chain object
[.cia_chains            Index a cia_chains object
[.cia_post_chain        Indexing with respect to iterations.
[.cia_post_chains       Index a cia_post_chains object with respect to
                        iterations.
[[.cia_chains           Index a cia_chains object
[[.cia_post_chains      Index a cia_post_chains object.
toBNLearn               Convert to bnlearn object.
toMatrix                Convert to adjacency matrix.
togRain                 Convert to a gRain object.
