BisRNA-package          Analysis of RNA Cytosine-5 Methylation from
                        bisulfite sequencing experiments
Bisdata                 Three synthetic samples of RNA bisulfite
                        sequencing for examples and tests
Bisdata1                Synthetic sample 1 of RNA bisulfite sequencing
Bisdata2                Synthetic sample 2 of RNA bisulfite sequencing
Bisdata3                Synthetic sample 3 of RNA bisulfite sequencing
RNAmeth.poisson.par     Find ratio (Poisson parameter / coverage) for
                        one sample of bisulfite-converted RNA
RNAmeth.poisson.test    Test RNA Cytosine methylation based on Poisson
                        model distribution
class.BisXP             Cast bisulfite experiment data into a BisXP
                        object
fisher.method           Function implementing Fisher's method to
                        combine independent p-values
intersectMatrix         Take intersection of 2 tables
read.BisXP              Read RNA bisulfite experiment data and cast it
                        into a BisXP object
samples.combine         Combine samples p-values and ratios
testMeth                Apply poisson.test to BS coverage and
                        non-conversion ratio.
