AcousticEvent-class     'AcousticEvent' Class
AcousticStudy-class     'AcousticStudy' Class
PAMpal.accessors        'AcousticEvent' and 'AcousticStudy' accessors
PAMpalSettings          Constructor for PAMpalSettings Object
PAMpalSettings-class    'PAMpalSettings' Class
addAnnotation           Add Annotation Data to an AcousticStudy Object
addBinaries             Add Binaries to a PAMpalSettings Object
addCalibration          Add a Calibration File to a PAMpalSettings
                        Object
addDatabase             Add a Database to a PAMpalSettings Object
addFPOD                 Add FPOD Detector to an AcousticStudy
addFunction             Add a Function to a PAMpalSettings Object
addGps                  Add GPS Locations to an AcousticStudy
addHydrophoneDepth      Add Hydrophone Depth Data to an AcousticStudy
addMeasures             Add Measures
addNote                 addNote
addRecordings           Add Recordings to an AcousticStudy Object
addSettings             Add Settingss to a PAMpalSettings Object
addWaveHeight           Add Wave Height Data to an AcousticStudy
bindStudies             Combine AcousticStudy Objects
calculateAverageSpectra
                        Calculate Average Spectra of Clicks
calculateEchoDepth      Calculate Depth from Echoes
calculateICI            Calculate Inter-Click Interval
calculateModuleData     Run Custom Calculations on Pamguard Module Data
checkStudy              Check an AcousticStudy Object for Issues
exStudy                 Example AcousticStudy Object
export_banter           Export Data for a BANTER Model
filter.AcousticStudy    Filter an AcousticStudy or AcousticEvent Object
filterEchoDepths        Filter Candidate Echo Depths
getBinaryData           Get Raw Binary Data for Detections
getClipData             Get Wav Clips of Data
getDetectorData         Extract and Combine Detector Data
getWarnings             Get Warning Messages
is.AcousticEvent        Check if an Object is an AcousticEvent
is.AcousticStudy        Check if an Object is an AcousticStudy
is.PAMpalSettings       Check if an Object is a PAMpalSettings
loadPamguardXML         Load Pamguard XML Settings
markAnnotated           Mark Detections as Annotated
matchEnvData,AcousticEvent-method
                        Match Environmental Data to an AcousticStudy
                        Object
matchTimeData           Match time-based data to PAMpal objects
plotDataExplorer        Explore Data in an Interactive Shiny Plot
plotGram                Plot Spectrogram or Cepstrogram
plotWaveform            Plot Graphical Representations of Waveforms
processPgDetections     Load and Process Detections from Pamguard
removeBinaries          Remove Binaries from a PAMpalSettings Object
removeCalibration       Remove a Calibration Function from a
                        PAMpalSettings Object
removeDatabase          Remove a Database from a PAMpalSettings Object
removeFunction          Remove a Function from a PAMpalSettings Object
removeNote              removeNote
removeSettings          Remove Settings from a PAMpalSettings Object
roccaWhistleCalcs       Calculate a Set of Measurements for Whistles
runDepthReview          Run Echo Depth Review App
runIciReview            Run ICI Review App
sampleDetector          Subsample Detectors in AcousticStudy
setSpecies              Set the Species Classification of Events
standardCepstrumCalcs   Calculate a Set of Measurements from a Cepstrum
                        Contour
standardClickCalcs      Calculate a Set of Measurements for Clicks
summariseDiveDepth      Summarise Dive Depth
testCeps                A fake cepstrum contour
testClick               A two-channel recording of a delphinid click
testGPL                 A fake GPL detection
testWhistle             A fake whistle contour
updateFiles             Update Location of Files in an AcousticStudy
updatePamObject         Update PAMpal S4 Object
writeEventClips         Create Wav Clips of Data
writeWignerData         Write Wigner Transform Data of Click Detections
                        to Disk
