FindSubPath             FindSubPath
GetExampleData          Get the example data
ICDS-package            Identification of Cancer Dysfunctional
                        Subpathway by integrating DNA methylation, copy
                        number variation, and gene expression data
Permutation             Permutation
PlotSubpathway          PlotSubpathway
combinep_three          combinep_three
combinep_two            combinep_two
coverp2zscore           coverp2zscore
envData                 The variables in the environment include an
                        example expression profile,an methylation
                        profile,an copy number variation data,amplified
                        genes,deleted genes,A numeric vector of
                        z_scores,p-values,A vector of 0/1s, indicating
                        the class of samples,interested
                        subpathways,Optimized subpathway,and the
                        statistical significance p value and FDR for
                        these optimal subpathways
getCnvp                 getCnvp
getExpp                 getExpp
getMethp                getMethp
opt_subpath             opt_subpath
