S3method("plot", "cepa")
export("plot.cepa")
S3method("plot", "cepa.all")
export("plot.cepa.all")
S3method("plot", "pathway.catalogue")
export("plot.pathway.catalogue")
S3method("print", "cepa")
export("print.cepa")
S3method("print", "cepa.all")
export("print.cepa.all")
S3method("print", "pathway.catalogue")
export("print.pathway.catalogue")
export("cepa")
export("cepa.all")
export("cepa.all.parallel")
export("cepa.ora")
export("cepa.ora.all")
export("cepa.univariate")
export("cepa.univariate.all")
export("generate.pathway")
export("get.cepa")
export("p.table")
export("pathway.nodes")
export("plotGraph")
export("plotNull")
export("radiality")
export("reach")
export("read.cls")
export("read.gct")
export("report")
export("sampleLabel")
export("set.pathway.catalogue")
export("spread")

importFrom(igraph, degree, vcount, graph.edgelist, get.vertex.attribute, layout.random,
    V, E, get.edgelist, ecount, get.adjacency, "E<-", "V<-", layout.reingold.tilford,
    shortest.paths, diameter, write.graph, betweenness)
importFrom("Rgraphviz", "layoutGraph", "renderGraph")
importFrom("grDevices", "cm", "col2rgb", "dev.off", "png", "rgb")
importFrom("graph", "nodeRenderInfo<-")
importFrom("graphics", "abline", "box", "hist", "layout", "lcm", "legend", "matplot", "par", "plot", "points", "polygon", "rect", "segments", "text")
importFrom("methods", "new")
importFrom("parallel", "makeCluster", "clusterCall", "clusterApply", "stopCluster")
importFrom("stats", "median", "p.adjust", "prcomp", "predict", "quantile", "rbinom", "runif", "var", "wilcox.test")
importFrom("utils", "read.table", "write.table")

