add_depths_to_ref       Add Read Depths To Ref
call_mutations          Identify Variants From A Potentially Mixed
                        Sample
create_ref              Create MixVir-formatted reference genome object
estimate_lineages       Estimate Lineage Proportions In Samples
explore_mutations       MixviR Shiny Dashboard
get_codons              Get Codons From Gene Sequence
id_indels               ID Indel-based Amino Acid Changes
id_snps                 ID SNV-based Amino Acid Changes
vcf_to_mixvir           Convert Sample VCF to MixviR Input Format
