Chow_GeneExpData        Chow gene expression data
Chow_MetaboliteData     Chow metabolite data
CoNI                    Correlation guided Network Integration
CoNIResultsHFDToy       Toy data HFD results
CoNIResults_Chow        CoNI Results Chow
CoNIResults_HFD         CoNI Results HFD
Compare_Triplets        Compare triplets
Compare_VertexClasses_sharedEdgeFeatures
                        Table VertexClass pairs of shared Edge Features
GeneExpToy              Toy data gene expression
HFD_GeneExpData         HFD gene expression data
HFD_MetaboliteData      HFD metabolite data
MetColorTable           Toy data annotation
MetaboExpToy            Toy data metabolite expression
MetaboliteAnnotation    Metabolite Annotation
NetStats                Network Statistics
VertexClassesSharedGenes_HFDvsChow
                        Toy data comparison treatments
assign_colorsAnnotation
                        Assing Colors to Class
createBipartiteGraph    Bipartite Network
create_GlobalBarplot    Vertex-class pairs profile of shared features
create_edgeFBarplot     Vertex-class pairs profile of one shared edge
                        feature
create_stackedGlobalBarplot_perTreatment
                        Stacked Global Barplot (One treatment)
find_localControllingFeatures
                        Find local controlling features
generate_network        Create network
getVertexsPerEdgeFeature
                        Vertex Class profile per edge feature (one
                        treatment)
getVertexsPerEdgeFeature_and_Grid
                        Vertex-Class profile per edge feature
                        Side-by-Side (two treatments)
getstackedGlobalBarplot_and_Grid
                        Stacked Global Barplot Side-by-side (two
                        treatments)
plotPcorvsCor           Correlation vs Partial correlation
tableLCFs_VFs           Table local controlling edge features and
                        vertex pairs
top_n_LF_byMagnitude    Linker Features by magnitude of effect
